CRISPRware

Getting started

Installation
Quickstart
Tutorials

Modules

Modules
NGS-guided design
- RNA-seq: keep expressed isoforms
- Ribo-seq: target translated ORFs

Scoring

Scoring methods

Cas12a UCSC tracks

The UCSC Cas12a track pipeline
Reading the track
- The bigBed columns
  - The eight score columns read percentile (raw)
  - score and color
- Off-target records
  - Coordinate geometry
  - _offset = 0 and uniqueness

Reference

Command reference
References

CRISPRware

Index

Index

© Copyright 2026, Eric Malekos.

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